Introduction

This repository holds the analyses and plots for the manuscript “Social context and dominance status contribute to sleep patterns and quality in groups of freely-moving mice”.

Karamihalev, S., Flachskamm, C., Eren, N., Kimura, M., & Chen, A. (2019). Social context and dominance status contribute to sleep patterns and quality in groups of freely-moving mice. Scientific reports, 9(1), 1-8.

Analysis and Figures

The analyses and figures for this manuscript are available as a r-markdown document under figures.Rmd

Helper functions used in figures.Rmd are available in the repository under /code.

Additional Sources

For additional details on the “Social Box” paradigm, see:

• Forkosh, O., Karamihalev, S., Roeh, S., Engel, M., Alon, U., Anpilov, S., … & Chen, A. (2018). Identity domains in complex behavior: Toward a biology of personality. bioRxiv, 395111.
• Shemesh, Y., Sztainberg, Y., Forkosh, O., Shlapobersky, T., Chen, A., & Schneidman, E. (2013). High-order social interactions in groups of mice. Elife, 2, e00759.
• Shemesh, Y., Forkosh, O., Mahn, M., Anpilov, S., Sztainberg, Y., Manashirov, S., … & Adler, E. S. (2016). Ucn3 and CRF-R2 in the medial amygdala regulate complex social dynamics. Nature neuroscience, 19(11), 1489.